HsaEX6021739 @ hg19
Exon Skipping
Gene
ENSG00000179761 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:17804]
Coordinates
chr17:27371236-27380151:+
Coord C1 exon
chr17:27371236-27371412
Coord A exon
chr17:27371877-27372025
Coord C2 exon
chr17:27379938-27380151
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTTTCCACTTCCAGTTC
3' ss Score
10.13
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTCAGCATCAGTTTCCTTGTTCATAAAATGAAGGGGCTGGAGTAGTTGAACTGGAAGGTTTTTTCTAATTTTGCTTCTTTGTGAATCTAAGTGAGGTGAGATTGCAGCAGGATGGTTGAAGACTAGCTAACAAAAGAACTTCTGGATGTGAACAACGTTAGCAAAAAGGAAGCCTAA
Seq A exon
TTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAGTGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAG
Seq C2 exon
GCAGACTGGATTACTGCTGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAGGCCAATCTGTCGAGGCAGAGGGTAGAACACCAGTGTCTTTCATCTGAGGAACTGAAGCAACGTTTCCCAAATATTCGGTTGCCCAGGGGAGAAGTGGGGCTCTTGGACAATTCCGGAGGAGTTATCTATGCATATAAGGCCCTCAGAGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179761-'2-5,'2-2,3-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
PF0126619=DAO=PU(10.6=95.5)
C2:
PF0126619=DAO=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGGATGGTTGAAGAC
R:
CTCCGGAATTGTCCAAGAGCC
Band lengths:
251-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)