HsaEX6021739 @ hg38
Exon Skipping
Gene
ENSG00000179761 | PIPOX
Description
pipecolic acid and sarcosine oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr17:29042900-29053133:+
Coord C1 exon
chr17:29042900-29043339
Coord A exon
chr17:29044859-29045007
Coord C2 exon
chr17:29052920-29053133
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTTTCCACTTCCAGTTC
3' ss Score
10.13
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGACAGGAAGGTGGCAAAGGAAGGAGCCCATTTGCATGACAATAATTGAGCCAAGAATAGAAAGCCACAGGGATGCAAGGGTGAGGCTGGCGGCTGAGCTGGGCTAAACCTCACAAATCAGACTACCCAGCTCTGCTCCGCAGGGGAAGGGAGACTGAGCCCTGGGCCAGGCTTGGCAGAGAGGGAAGCGGGAGGACACGACCCCAGGGCATTGTGGGAACACTGGCCAGGCTGGACTTTGCCTTCCTCCTCGTCCTTTAGCCGGGAGCCTGTCTTTGCTTGCCTTTGCCTTTGAGGCTCTGTGGCTGTGGGGCTGAGTGGCATCATGGCGGCTCAGAAAGATCTCTGGGACGCCATTGTGATTGGGGCGGGGATCCAGGGCTGCTTCACTGCATACCACCTGGCCAAACACAGGAAGAGGATCCTCCTGCTGGAGCAG
Seq A exon
TTCTTTCTACCACACTCCCGAGGAAGCTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAGTGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAG
Seq C2 exon
GCAGACTGGATTACTGCTGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAGGCCAATCTGTCGAGGCAGAGGGTAGAACACCAGTGTCTTTCATCTGAGGAACTGAAGCAACGTTTCCCAAATATTCGGTTGCCCAGGGGAGAAGTGGGGCTCTTGGACAATTCCGGAGGAGTTATCTATGCATATAAGGCCCTCAGAGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179761-'11-13,'11-10,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PU(11.0=76.3)
A:
PF0126619=DAO=PU(13.7=95.5)
C2:
PF0126619=DAO=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTCTTTGCTTGCCTTT
R:
TTCTACCCTCTGCCTCGACAG
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains