GgaEX1043942 @ galGal4
Exon Skipping
Gene
ENSGALG00000026392 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr19:5925677-5927144:+
Coord C1 exon
chr19:5925677-5925802
Coord A exon
chr19:5926322-5926470
Coord C2 exon
chr19:5926943-5927144
Length
149 bp
Sequences
Splice sites
3' ss Seq
CATGTCCCTATACCCCACAGTTC
3' ss Score
8.08
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATGGCTGCTCCGGGACAGCCCCGCTGTGCTTCCTACGATGCCATCGTCATCGGGGCCGGCATCCAGGGCTCCTTTGCTGCGTACCACCTGGCCCAGCGTTGTAAGGACACGCTGCTGCTGGAGCAG
Seq A exon
TTCTTCCTGCCCCACTCGCGGGGCAGCTCACACGGGCAGAGCCGCATCACGCGCAGCGCGTACCCGCAGGAGCACTACGCTCACATGATGCCCCACAGCTTCCGCCTCTGGCAGCAGCTGGAGGACGAGGCGGGCACTCCGCTCTACAG
Seq C2 exon
GCGCACAGGGCTGGTGGTGCTGGGCCCGCCGGGTGACCCCAAGCTGGAGAGCTACCGGCGCAACATGGGACCCGACAACGTCCTCGATGCGGTGACGCTGGCACAGCGCTTCCCTGGGCTCCGTCCCCGTCCCACTGAGGTGGCCCTGTGGGACGGCAGTGGAGGCGTGCTGCTGGCAGACCGAGCGCTGCGGGCGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026392_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.220 C2=0.088
Domain overlap (PFAM):
C1:
PF0126619=DAO=PU(8.2=69.0)
A:
PF0126619=DAO=FE(13.9=100)
C2:
PF0126619=DAO=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTCCTACGATGCCAT
R:
CCACAGGGCCACCTCAGT
Band lengths:
254-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]