RnoEX6048642 @ rn6
Exon Skipping
Gene
ENSRNOG00000008798 | Pipox
Description
pipecolic acid and sarcosine oxidase [Source:RGD Symbol;Acc:1311347]
Coordinates
chr10:64952119-64961740:+
Coord C1 exon
chr10:64952119-64952429
Coord A exon
chr10:64953754-64953902
Coord C2 exon
chr10:64961527-64961740
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCCCCTGCTTCTAGTTC
3' ss Score
8.74
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGTCTACCCAGCTCTGCTCTGCAGGGGGAGGCGGAGGCTGAGCCCCGTGCCAGGCTTTTCTGGGAGGGAAAGAAGGACAAGGACACTGGCCCCAAGGGATTTTGGGAACACTAGCTTAACTGGACTTTGCCTTTCTCCTCCCCCTCTAGCCTGGAGGTGCCTTTGTTTGCCTTCTCCTTCGTGGGTTTTGTGGCATCATGGCTGCTCAGACAGATCTCTGGGATGCTATTGTGATTGGAGCAGGCGTCCAGGGCTGTTTTACCGCGTACCACCTGGCCCAGAATTCCAAGAAGGTCCTCCTGCTGGAGCAG
Seq A exon
TTCCTTCTTCCCCATTCCCGAGGAAGCTCACATGGACAGAGCCGCATAATCAGAAAGGCTTACCCCGAGGACTTCTACACAAGGATGATGGATGAATGTTATCGGACATGGGCCCAGCTGGAGCGTGAAGCTGGAGCCCAGTTGCACAG
Seq C2 exon
GCGGACTGAACTCTTGTTTCTGGGAATGAAGGAAAATCCAGGATTAAAGACAATCCAGGCCACTCTGTCTAGGCAGGGGATTGACCACGAGTGCCTTTCATCAGTGCATTTAAAGCAACGCTTTCCAAACATTCGGTTCACCAAGGGAGAAGTAGGGCTCTTAGACAAGACTGGAGGTGTTCTCTATGCAGACAAGGCCCTCAGAGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008798-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PU(8.1=76.3)
A:
PF0126619=DAO=FE(13.8=100)
C2:
PF0126619=DAO=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTCCTCCCCCTCTAGCC
R:
ACAGAGTGGCCTGGATTGTCT
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]