BtaEX0027586 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007830 | PLEKHM3
Description
Bos taurus pleckstrin homology domain containing, family M, member 3 (PLEKHM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206217]
Coordinates
chr2:96696951-96749397:-
Coord C1 exon
chr2:96749247-96749397
Coord A exon
chr2:96719264-96720174
Coord C2 exon
chr2:96696951-96697886
Length
911 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTATTTTCTTTCAGGAA
3' ss Score
11.45
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAGAAGCGCTTGTAAACAGAGAGCCGGGCCGGAGTGGTCGGTGGCCAAATGGGCTGTCACCGTGAGGAGGGCGGGCTGCCGAAACCTAGCCCCAGCCTGGAGTAGGTTGCAGGCCTTGCAGGTGAAGGGAGAGAAGCAGTCGGTGGCCAG
Seq A exon
GAAATCAAAGATGGCCGTGACGTTGCTTTGACAAACACTTCCTATTGTCTTGACAGTGGTCTCCCTGAAGAGTATTCTCAAAGGAATATTTGTCTCCCAGTATCTTTGTTGATGACTGTTATCATCTAGAAAATGCTTTTCATGTTTGGGAAATCAGCCACCCTTGTGCTTGACCTGCTCCGGGCAGCTGAATGAAAGTTCCTTCCAGTTGCTTCCAGAACTCTGTTGCCGAAAATGCTTCTGCTCGTTGGGTGAATGTTCATGAAGCCCTTTCCTGAACCAGTGTAGGAGGCTTTGGCCCCTTGGAGCCTATGACATGGAAGCTTTGGAAGTGGATGATATTAGCCCAGCCTTGGAAGTGACTGAGGATTTCTTTAATACTTTTGACAATAAGCTCGAAAAGGCTGTGCAGCAAGCGGAGGTTTATGGGATCCAAGAAGTCCCTGAACTGGTGGGGCGGGAGGTCCTCGGTAACATAGACAATGGTGCTATCAGAAATGTCACCTCCCTGGGCCAGGGTGGCGTGATCTGGGACCATTGTAAGACCAGACTCTTAGACACCAAAGTTCCAAATGTCTTCCCTGCCAAAGAACAGTTTATGGTCCAGAAGGGAACGACCCCAGATAATCTGTCCTGGATGGAACAAAAGGAAGCATCCACCTTTAATTTTTTCAACATCTGTCAGCGTCGGAGAGACAGGCCTCGTTCTGTGAATGACTTATTGGATGAGACCTCTACTTTTAAGCCTGGGCATGCTCGATCAAGGTCAGATATTACCCAGGTGGACTGGAGGGTGGTCCTCAAAACCATGCCTCTGCAGCAAGAAGTATCTCTTCAGGGTCCTCACTTTGCCAGGCCTTCTTTGCTGTTGTCCTCATCAAACAAGGTAGAAGATGCTCAAGGAAATACAG
Seq C2 exon
AACACAAGCCAGCATTCCCGAACATCCTGAAGAAGGGTTACCTGGAGATTCGGAAGGAGCATGACAGTTACTGGCAAAGCTGTTACGCCGAGCTCTCCCCCTACAGCTTATACTTCTACAGCCTCGACAGCAGTGGGAATCAGAACCTCTACGCCACGTACCAGCTGTCCCACTTCCAGAGCATATCCGTTCTGGGAAACCTTGAGGCCAGGCTGGTGGACACCGTCCTGTATGACAACACTCAGCTGCAGCTAAAGGCAGAGTCACCGTGGGAGGCTTTGGACTGGGGGCAGAAGCTCTGGGAAGGTGTGCATGCGGCCGCACCAGCCTACATGGGCCGGCCGGGAGAGCTGGCCAACTCCCCGGGGCTTGGCCATCATGTGGACTGTCCACAGAATCATTGTTTACAGAAGAAATCCCGCGAGCTGCTCATGCCATCCCCTGTGCTGGATAGCCCCAAACAGTATCAAAACATCCTCAAATCCGGGACACTGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007830_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.166 C2=0.064
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=WD(100=30.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTTGTAAACAGAGAGCC
R:
CCTCAAGGTTTCCCAGAACGG
Band lengths:
353-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development