DreEX0056318 @ danRer10
Exon Skipping
Gene
ENSDARG00000030633 | plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
Coordinates
chr9:28329439-28350136:+
Coord C1 exon
chr9:28329439-28329473
Coord A exon
chr9:28340081-28340949
Coord C2 exon
chr9:28349189-28350136
Length
869 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTGTCTAAATCCAGGAT
3' ss Score
6.75
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CGGAACTGAATGTGACAGATTGTAAACAGTATCGG
Seq A exon
GATGTCAGACCCTAGGGAAGGACGTCCTGATGCCATGTTGCATCTATCGCTTGGTGATTTACTGCCTTACAGGCTGCAGGGATTTAATTGAAGTGCTCGTCTGGATAAGACAACACCTGTTCTAGACAGCTCTGAGTTTGCCCTCACCTTACCTACTGCTGATACTGATAGCTGGCACAGCGGTCACTTCTCATTAGGTTCTTGATTAACAACGTTGGCTCATAAAGTGACAGTTCTGGAAGGGGTTCAGGCGTTTGTGGACCATCTGTTTTGCCACACTTCCATTCGGGTCCAGACAGCAGATGTTCCGTCTGCGGTGCCTTGAGGCTTCTCGATCCTGCCCTCACGCACACGAGGATTCGGTCCATTTTCTCCACCCCTCGGCTTCTTCTGTGACACCAAAACTGTCGAGGTGATGGAGGGTCTGGAGGTCGAGGATATTAGTCCAGCCCTCGAGGCCACCGAGGACTACCTGCACTGCCTCGATGACAATCACGGAGATGCCCAGGTACACCCACCCAAACTTAAAGAGGCATCCACCTTGGACAAGCTGAACTCCAGTGGGGTGTGGGGGCTTCTGACAGGAAAGCAGTCTCAGCTATCACCTGGTAATATGGCCTGGGCAGAGCAGACTCCCTTCAGTGTGCTGAGCCTTCGAAATGGGAAAAGAAACCGAGCTCGATCCACCAATGATTTGGCGGCACATGCCAAAGAGACAAACTCCACCACCAACACGTCCAGCGGGGGCTTCAAACGTGGCCACAATCGCTCCCGTTCAGATGTCAACAACCGCACCTACACCGATAATGGCATGCCAGCCATTGATAAAAATATGTTCAAGAACATGGCGCTAAACGACCACAGGGATG
Seq C2 exon
CTCACAAGGAGAGCAGCTCTTACCTGGTGAAGCAGGGAACTCTAGAACAGCGAGAAGGCCCGTGGGGACGGTGGACTGCCTGTCATGTGGAGCTTACACCCTGCGAACTGCGTCTCTACAGCCTCGACAGCAGCGGAAACCAGCAGCTATGTGCCGCCCTCTCGCTGTCCCACTGCCAAGGGGTAAGTGCGCCACAGCCACAGGACGGACGGGTGCTACAGGCCGTCTTCTTTAACAGCACCCGTGTGCAGTTACGAGCACCCTGCCAGTGGGAGGCACTGGAGTGGCGTAGACTCCTCTGGGAACGAGTCTTGGCCGCCCGTCCCACTCACAGCAAAGCGGAGCCAGCTTGTGCCAACTCCCCAACCCCCCATGAACCTGACCCAGATGCAGCGATGGTTCCCGCTCCTCGTCCACTGGTACGTCCCACCGCCCTACCACTGTTCACCCAGCACTGTGCTGATGTTCTCAAGTCTGGCCTTCTGCACCAACTCACCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030633-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.829 C2=0.227
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=WD(100=29.7),PF0016924=PH=WD(100=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACTGAATGTGACAGATTGT
R:
CCAAGACTCGTTCCCAGAGGA
Band lengths:
350-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]