RnoEX6040077 @ rn6
Exon Skipping
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71616769-71646599:-
Coord C1 exon
chr9:71646541-71646599
Coord A exon
chr9:71631162-71631985
Coord C2 exon
chr9:71616769-71617701
Length
824 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTGTTTTCTCCCAGGAA
3' ss Score
10.12
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TGGCTCCTGGCCGTTTGCTGGCTTGTGTCATAGCAGATGTTCACCCCTTGGAAGAAAAG
Seq A exon
GAAGTTGAAGATTGGCGTTACATTGCTTTGGCAAACAGTGCCCTGCTGTCTTCACCGAGATCTCTAACAAGCCCCTGTGCTTCTCCAGGCAGCCAGATGAAGATTGCTTCCTCTCGTCTCCACAGCTGCGCTGCCGAATCACCTCTCTCTGTCGGCTGAGTGCTCATGACGCCTTTTCCTTGAAGCAGTTTAGAAGCGTGGACCCTGTGTCATGGAAGCTTTGGAGGTAGATGACATCAGCCCCGCCTTAGAGGTCACTGAGGACTTCTTCAGTACTTTTGACAGTAAGCTGGGAAAGGCTGTACAGCAGGCAGAGGTCTATGGGGTCCAGGAAGTCCCTGAACTGGTGGGGCACGAGGTACTTGGTAACATAACAGACAATGGTGCTTTGCGAAGCGTCGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTCCTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGGTCCAGAGAGGGACAGCCCCAGACAATCTTTCCTGGATGGAACAGAAGGAAGCATCAACCTTCAACTTCTTCAACATTTGTCAGCGTCGGAGGGACAGACCTCGCTCTGTGAATGACTTATTGGACGAGACCACGACTTTCAAGCCAGGACATGCTCGGTCAAGGTCCGATGTTACCCATGTTGACTGGCGGGTAGTCCTGAGCACCATGCCTTTGCAGCAACAGCAGCAGCAGCAGCAGGCGTCCCTTCACGGCCCTCACTTCCCCAGGCCGTCTTTTCTGTTGTCTTCATCCAATAAGGTTGAAGATGCTCAAGGAAATACAG
Seq C2 exon
AACACAAGCAGACATTCCCAAACATACTGAAGAAGGGTTATCTGGAGATCAGGAAGAACCATGACAGTTACTGGCAAAGCTGTTATGCAGAACTCTCACCCTACAACTTAAACTTCTACAGCCTCGATAGCAGTGGGAATCAGAACCTTTATGCCACGTACCAGCTTTCCCACTTCCAGAGCATATCTGTTTTAGGCAATCTGGAGGCCAGGATGGTAGACACTGTTCTCTACGACAATTCTCAGCTGCAGCTAAAGGCAGAGTCCCCGTGGGAGGCGTTGGACTGGGGGCAGAAGCTCTGGGAAGTTGTACATGCTGCTGTGCCCAATTACATGGCACGGCAGGAGGAGAAGGCAAACTCTCCAGGACTTGGTCATCATGTTGACTGTGCACAGAACCACTGTTTACAGAAGAAATCTAGTGGGCTGCTGGCCTCCCCTGTCTTGGATAGCCCCAAACAGTACCAAAACATCCTGAAATCAGGGACACTCTACAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760-'2-6,'2-3,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.278 C2=0.064
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=WD(100=30.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCTTGTGTCATAGCAG
R:
CAACTTCCCAGAGCTTCTGCC
Band lengths:
353-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]