MmuEX6024859 @ mm10
Exon Skipping
Gene
ENSMUSG00000051344 | Plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:MGI Symbol;Acc:MGI:2443627]
Coordinates
chr1:64921550-64956824:-
Coord C1 exon
chr1:64956695-64956824
Coord A exon
chr1:64937697-64938539
Coord C2 exon
chr1:64921550-64922482
Length
843 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTGTTTTCTCCCAGGAA
3' ss Score
10.14
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTGGAACTCTGTGTAATCGGATCCTGTTGCCGGGCTGCCGCGGGGAAGCTTTTGGGCGTGGGACCGCGAGAAGCCGCTTGTAAACAGAGCCGGGCCGGGATGGTCGGCAGCTGGAGCGCAGTCGCTGGCG
Seq A exon
GAAACTGAGGATTGGCCATACATTGCTTTGGCAAACACCGCCCGCCCTGCTGTCTTCCCTGAGATCTCTAAGAACAAGGCCCGTGCTCCTGTGCTTAGCCTTCTCTAGGCAGCCAGATGAAGATTGCTTCCTCTTGTTTTCACAGTTGTATTGCTGAACCACCTCTCTCTGTTGGCTGAGTGTTCATGACACCTCTTCCTGAAGCAGGTTAGAAGCTTGGACCCTGTGTCATGGAAGCTTTGGAAGTAGATGACATCAGCCCCGCCTTAGAGGTTACTGAGGATTTCTTTAGTACTTTTGACAGTAAGCTGGAAAAGGCTGTCCAACAAGCAGAGGTTTACGGGATCCAAGAAGTCCCTGAACTGGTGGGGCATGAGGTACTTGGTAACATAGCAGATAATGGTGCTTTAAGAAGCGTTGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTTTTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGGTCCAGAGAGGGACAGCCCCAGATAATCTTTCCTGGATGGCACAAAAGGAAGCGTCAACCTTCAATTTTTTCAACATCTGTCAGCGTCGGAGGGACAGACCTCGTTCTGTGAATGACTTATTGGATGAGACCACAACTTTCAAGCCAGGCCATGCTCGGTCAAGGTCCGATGTTACCCACGTAGACTGGCGGGTAGTCCTTAGCACCATGCCTTTGCAGCAGCAGCAGCAGCAGCAGCAGGCGTCCCTTCAAGGCATTCACTTTCCCGGGCCATCTTTTCTGTTGTCTTCACCCAGCAAGGTTGAAGATGCTCAAGGAAATACAG
Seq C2 exon
AACACAAGCAGACATTCCCAAACATCCTGAAGAAGGGTTATCTGGAGATCAGGAAGAACCATGACAGTTACTGGCAGAGCTGTTATGCAGAACTCTCACCCTACAACTTAAACTTCTACAGCCTTGATAGCAGTGGCAATCAAAACCTGTATGCCACATACCAGCTTTCCCACTTCCAGAGCATCTCTGTTTTAGGCAATCTTGAAGCTAGGATGGTAGACACTGTTCTCTATGACAATTCTCAACTGCAGCTAAAGGCAGAGTCTCCATGGGAGGCATTGGACTGGGGGCAGAAGCTCTGGGAAGTCGTGCATGCTGCTGTACCCAATTACATGGGACGGCAGGGTGAGATGGCAAACTCTCCAGGACTCATCCATCATGGTGACTGTGCACAGAACCACTGTTTACAGAAGAAATCCAGTGGGCTGCTGGCCTCCCCTGTCTTGGATAGCCCCAAACAGTACCAAAATATCCTCAAATCAGGGACACTCTACAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051344-'0-3,'0-1,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.215 C2=0.054
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=WD(100=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGCTTGTAAACAGAGCC
R:
AGTCCAATGCCTCCCATGGA
Band lengths:
345-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types