BtaEX0027741 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105607710-105621369:+
Coord C1 exon
chr11:105607710-105607796
Coord A exon
chr11:105620681-105620809
Coord C2 exon
chr11:105621289-105621369
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACTGGGGCTGTCGTTGCAGGGC
3' ss Score
5.98
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGCAGGACGGCACTGAGGTGACAGTCAAAGAGGTTCTGGCTGGAGACAGCGTCCACAGCCTCCTCAGCATTCTGGACGTCATCACC
Seq A exon
GGCCACGCCGCGCCGTACAAAACTGTGTCCGCCCGCGCTGCCGTCCCCTCCACCATCCTCCGGCTCCCGGCTACGGCTTTTCAAGGAGTGTTTGAGAGATACCCTGAAACGCTGGTGAGGGTGGTGCAG
Seq C2 exon
ATCATCATGGTGCGGCTGCAGAGGGTCACCTTTCTGGCTCTGCACAACTACCTGGGCCTGACCACGGAGCTCTTCAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(28.0=100)
A:
PF0002724=cNMP_binding=PD(35.0=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACGGCACTGAGGTGA
R:
GGATTGAAGAGCTCCGTGGTC
Band lengths:
164-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development