GgaEX1044842 @ galGal3
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:1994840-2001623:+
Coord C1 exon
chr17:1994840-1994920
Coord A exon
chr17:2000048-2000176
Coord C2 exon
chr17:2001543-2001623
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTAACTTTCTGTTAGGGT
3' ss Score
7.34
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATGGCACAGAAGTGATTGTTAAGGAGGTGCTGGCAGGAGACAGTGTCCACAGTCTTCTCAGCATTCTAGATGTCATCACG
Seq A exon
GGTCACCCTGCTCCATACAAAACAGTCTCAGCCCGGGCAGCCACTCCATCCAATATACTGCGACTTCCAGCAAGTGCCTTTCAAGATGTCTTCCAGAAATACCCTGAAACTCTTGTTAGAGTGGTGCAG
Seq C2 exon
ATCATCATGGTGAGGCTGCAGAGAGTGACATTCCTTGCCTTGCACAACTACCTTGGGCTGACTACTGAGCTCTTCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(26.5=100)
A:
PF0002724=cNMP_binding=PD(35.7=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGTGATTGTTAAGGAGGTGC
R:
AATTGAAGAGCTCAGTAGTCAGCC
Band lengths:
154-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]