GgaEX1044842 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1595160-1601943:+
Coord C1 exon
chr17:1595160-1595240
Coord A exon
chr17:1600368-1600496
Coord C2 exon
chr17:1601863-1601943
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTAACTTTCTGTTAGGGT
3' ss Score
7.34
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATGGCACAGAAGTGATTGTTAAGGAGGTGCTGGCAGGAGACAGTGTCCACAGTCTTCTCAGCATTCTAGATGTCATCACG
Seq A exon
GGTCACCCTGCTCCATACAAAACAGTCTCAGCCCGGGCAGCCACTCCATCCAATATACTGCGACTTCCAGCAAGTGCCTTTCAAGATGTCTTCCAGAAATACCCTGAAACTCTTGTTAGAGTGGTGCAG
Seq C2 exon
ATCATCATGGTGAGGCTGCAGAGAGTGACATTCCTTGCCTTGCACAACTACCTTGGGCTGACTACTGAGCTCTTCAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'10-9,'10-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(26.5=100)
A:
PF0002724=cNMP_binding=PD(35.7=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGTGATTGTTAAGGAGGTGC
R:
AATTGAAGAGCTCAGTAGTCAGCC
Band lengths:
154-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]