DreEX6010739 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24560904-24562460:-
Coord C1 exon
chr5:24562380-24562460
Coord A exon
chr5:24562135-24562263
Coord C2 exon
chr5:24560904-24560984
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGAACTCCTTATTCTGCAGGGA
3' ss Score
8.57
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GATGGGACTGATGTTGTGGTGAAGCATGTTTTACCTGGAGACAGTGTTCACAGTCTTCTCAGCATCCTCGACGTCATCACT
Seq A exon
GGATATCCAGCTCCGTATAAAACTGTCTCTGCAAGGGCTGCTATCCCAACTACTGTTCTCCGTCTCCCCGCTCAGGCCTTCCAGTCTGTTTTTGATAAATACCCAGAAACCCTAGTCCGAGTCGTTCAG
Seq C2 exon
ATCATCATGGTGCGTCTTCAGAGAGTTACCTTTCTTGCCCTTCACAACTATCTGGGCCTGACCACAGAACTTTTCAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(26.5=100)
A:
PF0002724=cNMP_binding=PD(35.7=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGACTGATGTTGTGGTGA
R:
CGGATTGAAAAGTTCTGTGGTCA
Band lengths:
162-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]