MmuEX6099394 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24987119-24996237:+
Coord C1 exon
chr2:24987119-24987199
Coord A exon
chr2:24995278-24995406
Coord C2 exon
chr2:24996157-24996237
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAACAGAGTCATTGTTACAGGGT
3' ss Score
1.6
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GATGGCACCGAAGTGGTGGTCAAAGAGGTCCTGCCAGGGGACAGTGTCCACAGTCTCCTCAGCATTTTGGATGTGATCACC
Seq A exon
GGTCACACTGCACCATACAAAACAGTTTCTGCCCGTGCCGCTGTCTCGTCCACCGTGCTCTGGCTTCCTGCAGCAGCTTTTCAAGGAGTGTTTGAGAAATACCCTGAAACTCTGGTCAGGGTTGTGCAG
Seq C2 exon
ATCATCATGGTCCGGCTGCAGCGGGTGACTTTCCTGGCTCTGCACAACTACCTGGGGCTGACTACAGAGCTCTTCAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'19-22,'19-19,23-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(26.5=100)
A:
PF0002724=cNMP_binding=PD(35.7=81.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGTGGTGGTCAAAGAGG
R:
AGGGTTGAAGAGCTCTGTAGTCA
Band lengths:
155-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types