BtaEX0027801 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19389518-19392149:+
Coord C1 exon
chr3:19389518-19389693
Coord A exon
chr3:19390594-19390702
Coord C2 exon
chr3:19391859-19392149
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGCTTTTTAATGCAGGGA
3' ss Score
8.42
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGCAATTCTTTGGTGCAACAAGGTGGACAGCCACTCATCCTAACCCAGAATCCAGCCCCAGGTCTCGGTACAATGGTTACTCAACCAGTATTGAGGCCTGTGCAGGTCATGCAGAATGCCAACCATGTGACTAGTTCGCCGGTAGCCTCACAGCCAATATTTATCACTACACAG
Seq A exon
GGATTTCCTGTAAGAAATGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGTTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTCCCAG
Seq C2 exon
CCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCTGTGAGGCCAGGCTCCACGATGCCTGTGCGGCCCACCACCAACACCTTCACCACCGTCATCCCAGCCACTCTCACCATTCGAAGCACCGTCCCACAGTCCCAGTCCCAGTCGACCAAGTCCACTCCCAGCACTTCCACCACACCCACTGCCACACAGCCGACCTCACTGGGGCACCTTGCTGTCCAGCCCCCAGGCCAATCCAGCCAGACTCAGAACCCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=0.338 C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTATTGAGGCCTGTGCAG
R:
CGGTGCTTCGAATGGTGAGAG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development