DreEX6042132 @ danRer10
Exon Skipping
Gene
ENSDARG00000076542 | pogzb
Description
pogo transposable element with ZNF domain b [Source:ZFIN;Acc:ZDB-GENE-100609-3]
Coordinates
chr16:38171342-38172040:+
Coord C1 exon
chr16:38171342-38171514
Coord A exon
chr16:38171613-38171712
Coord C2 exon
chr16:38171795-38172040
Length
100 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTTCATCTGATACAGGGT
3' ss Score
8.87
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TAACTCAACGTGCGGTTGTGCCGACTGAGATCCCTAAAGCAGTGCAAGGGCAGCCGGTCATCTTGGCACCAGGAGGAGGTGGACTGGGCACTGTGGCTCTGTCACAGGTTCTCCTGCCTGGAACATCTATTGCCAATGTTACCAACAGTCAGCCGATCTACTTTACCACACAG
Seq A exon
GGTCTTCCTGTCCAGAATATCCAGCCTGGCCAGGGTCCAATGAGTTTAGTGCTGAATGTCCAACAAGGCCAAACTGTTCGACCGATTACTCTACTCCAGG
Seq C2 exon
CACCTGGCACACAAATTTTCAAACCAGCCATCGGAGCAACCCAAATAATTACCCAGCCTGCTCAAATAAGGGCTGGAGCTCCGGTTGTAAACAGAGCCCAAACGCCTAGTACTTTCAGCACAGTGCAGATCCCTGCTACTCTCACTTTTCGAACCACAAACGCGGTCACCCCAACAGCTGCCAGTTCTCTACCCATCGTATCTTCTACAACCATTACTCAGCCTACCAGGACCACTACTAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076542-'8-13,'8-11,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.052 C2=0.224
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCGACTGAGATCCCTAA
R:
GGGCTCTGTTTACAACCGGAG
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]