RnoEX0067848 @ rn6
Exon Skipping
Gene
ENSRNOG00000053599 | Pogz
Description
pogo transposable element derived with ZNF domain [Source:RGD Symbol;Acc:1309980]
Coordinates
chr2:196019968-196023506:+
Coord C1 exon
chr2:196019968-196020143
Coord A exon
chr2:196021414-196021522
Coord C2 exon
chr2:196023216-196023506
Length
109 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCTTTTTGATACAGGGA
3' ss Score
8.47
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGTAATACTTTGGTCCAGCAAGGTGGACAACCACTCATCTTGACCCAAAATCCAACACCGGGTCTGGGAACAATGGTTACTCAACCAGTATTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCCTGTGGCCTCACAACCTATCTTCATCACTACCCAG
Seq A exon
GGATTCCCTGTAAGGAATGTTCGCCCTGTACAGAATGCCATGAACCAGGTTGGGATCGTGCTGAATGTACAGCAAGGCCAAACAGTCAGACCAATTACACTGGTCCCAG
Seq C2 exon
CCCCAGGTACACAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCCGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTTACCACCGTCATCCCAGCTACTCTCACCATCCGAAGCACTGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACCCCCAGTACCTCCACTACTCCCATTGCCACACAGCCAACCGCATTGGGGCAGCTAGCTGGTCAGCCTCCAGGCCAGCCCAACCAGACCTCGAATCCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053599-'10-10,'10-7,11-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=0.351 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAAAATCCAACACCGG
R:
GGTAAAGGTGTTGGTGGTGGG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]