GgaEX1044940 @ galGal3
Exon Skipping
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1955991-1957595:+
Coord C1 exon
chr25:1955991-1956129
Coord A exon
chr25:1956718-1956826
Coord C2 exon
chr25:1957416-1957595
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGATTACTGTTTGAATGCAGGGA
3' ss Score
5.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATCCTCACCCAGAACCCAACCTCGGGTCTGGGCACCATGGTGACCCAGCCAGTGTTAAGACCTGTGCAGATCATGCAGAATGCCAACCATGTCACAAACTCCCCGGTGACCAGCCAGCCCATCTTCATCACTACCCAG
Seq A exon
GGATTTCCCGTGCGGAACGTGCGGCCTGTGCAAAACACGATGAATCAAGTGGGAATTGTCCTGAATGTACAGCAGGGTCAGACAGTCAGACCCATCACCCTTGTCCCAG
Seq C2 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.081 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCCAGTGTTAAGACCT
R:
CACTGTGCTCCTGATGGTGAG
Band lengths:
251-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]