GgaEX1044940 @ galGal4
Exon Skipping
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2073684-2075220:+
Coord C1 exon
chr25:2073684-2073859
Coord A exon
chr25:2074448-2074556
Coord C2 exon
chr25:2075146-2075220
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGATTACTGTTTGAATGCAGGGA
3' ss Score
5.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCGGCAACCCTCTTGTTCAGCAAGGCGGACAGCCCCTGATCCTCACCCAGAACCCAACCTCGGGTCTGGGCACCATGGTGACCCAGCCAGTGTTAAGACCTGTGCAGATCATGCAGAATGCCAACCATGTCACAAACTCCCCGGTGACCAGCCAGCCCATCTTCATCACTACCCAG
Seq A exon
GGATTTCCCGTGCGGAACGTGCGGCCTGTGCAAAACACGATGAATCAAGTGGGAATTGTCCTGAATGTACAGCAGGGTCAGACAGTCAGACCCATCACCCTTGTCCCAG
Seq C2 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=0.378 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACCCTCTTGTTCAGCAA
R:
GTCTCACCTGGGCCACCT
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]