BtaEX0027960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101652750-101654321:+
Coord C1 exon
chr11:101652750-101652800
Coord A exon
chr11:101653341-101653487
Coord C2 exon
chr11:101654210-101654321
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCTCACTCTTCCAGAAT
3' ss Score
10.35
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GTTATTTAGGAGGATTCGATGGTAACTTTCTGTGGAACAGAATTGGAGCAG
Seq A exon
AATACAGCAGCAATGTGCCCGTGTGGTCCCTGCGCCTGCTGCCGGCCCTTTCGGGGGCCCTGTCGGTGCCCATGGCCTATGAGATCGTGTGGGAGCTCGGCTTCTCTCACTGTGCCGCCACGGGGGCTGCTCTGCTGCTGTTGATTG
Seq C2 exon
AGAACGCTCTCATCACTCAGTCAAGGTTAATGCTTTTGGAATCAGTGCTGATATTTTTCAATCTGTTGGCCGTGCTGTCTTACCTGAAGTTCTGCAACTCCCAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805-'9-7,'9-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(20.5=100)
A:
PF0236613=PMT=FE(19.8=100)
C2:
PF0236613=PMT=FE(14.9=100)
Main Skipping Isoform:
ENSBTAT00000014315fB5383
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTAGGAGGATTCGATGGTAACT
R:
CTGTGTTTCTGGGAGTTGCAGA
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development