RnoEX6016423 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11257682-11260024:+
Coord C1 exon
chr3:11257682-11257732
Coord A exon
chr3:11258709-11258855
Coord C2 exon
chr3:11259913-11260024
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTATGTGATTCCTTTTCCAGAAT
3' ss Score
9.54
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTTGGCTAGGAGGATTCGATGGGAACTTTCTGTGGAACCGAATTGGAGCAG
Seq A exon
AATACAGTAGCAATGTGCCTGTATGGTCCTTACGCCTGCTGCCGGCGCTTGCTGGGGCCCTGTCAGTACCCATGGCCTACCAGATAGTGTTGGAGCTCCACTTTTCCCACTGTACTGCCATGGGAGCCGCCCTGCTGATGCTCATTG
Seq C2 exon
AGAACGCCCTAATCACTCAGTCCAGGCTCATGCTGTTGGAATCCATACTGATATTTTTTAACCTCTTGGCCGTGTTGTCCTATCTGAAGTTCTTCAACTCCCAAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(19.3=100)
A:
PF0236613=PMT=FE(19.8=100)
C2:
PF0236613=PMT=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTAGGAGGATTCGATGG
R:
TGTGTGTTTGGGAGTTGAAGAACT
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]