MmuEX6100510 @ mm9
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32096185-32098524:+
Coord C1 exon
chr2:32096185-32096235
Coord A exon
chr2:32097173-32097319
Coord C2 exon
chr2:32098413-32098524
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCTATGTGATTCCTTTCCAGAGT
3' ss Score
6.53
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTTGGTTAGGGGGATTCGATGGTAACTTTCTGTGGAACCGAATTGGAGCAG
Seq A exon
AGTACAGTAGCAATGTGCCTATATGGTCCTTACGCCTGCTGCCAGCGCTTGCCGGGGCCCTGTCAGTGCCCATGGCCTACCAGATAGTGCTAGAGCTCCACTTTTCCCACGGTGCTGCCATTGGAGCCGCCCTGCTGATGCTCATTG
Seq C2 exon
AGAACGCCCTGATCACTCAGTCCAGGCTCATGCTGTTGGAGTCCATACTGATATTTTTTAACCTGTTGGCTGTGTTGTCCTATCTGAAGTTCTTCAACTCCCAGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(6.9=100)
A:
PF0236613=PMT=FE(19.8=100)
C2:
PF0236613=PMT=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTAGGGGGATTCGATGGT
R:
CTGTGTGTCTGGGAGTTGAAGA
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: