DreEX0057071 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50465587-50469958:+
Coord C1 exon
chr5:50465587-50465637
Coord A exon
chr5:50467191-50467337
Coord C2 exon
chr5:50469865-50469958
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTTATGTTTTTACATTTTAGAAT
3' ss Score
8.32
5' ss Seq
TGGGTAACC
5' ss Score
3.95
Exon sequences
Seq C1 exon
CGTATTTAGGAGGATTTGATGGCAACTTTGTTTGGAACAGAATTGGAGCAG
Seq A exon
AATACCCTGGTAATGTCCCTGTTTGGAGCCTTCGACTGATACCGGCTCTGGCAGGCTCTTTTTGTGTGCCACTTGCATATCTTGTAGTAGTGGAGCTGGGATACTCCCACTTCTCGGCACTGGGGGCCTGTGCACTTCTCCTCATGG
Seq C2 exon
AGTAAAGTACATGGGTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(7.0=100)
A:
PF0236613=PMT=FE(20.1=100)
C2:
PF0236613=PMT=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGATTTGATGGCAACTTTGT
R:
ATGGCTCAAGGTTTGATCTCCA
Band lengths:
138-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]