BtaEX0028672 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101602244-101605081:+
Coord C1 exon
chr11:101602244-101602387
Coord A exon
chr11:101604262-101604503
Coord C2 exon
chr11:101604960-101605081
Length
242 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCTTTCCATTTCCAGATG
3' ss Score
12.83
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTTAAGGGCCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGAGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGTCTTAGATCCGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
Seq A exon
ATGTGACAAGCTGGAGGGAGGGCGGTGGGCGAAACATAATTTCTGCCACGTCTCTGAGCGCCTCCCCAACTGAGCTGGGCAGCAGGAATTCGAGTGCGGGAGACGGAGCCCCCTCCTCGGCGTGCGCCAGCGAGTCTAAGGACCCCTCGCTCCGCCCGCCTCAGCCTGTCCGCAGAGGGGCTTCACAGTTCTTGGGGAGTGTATACCACCCACCTACATACCATGACATGCTTCCTGCCTTT
Seq C2 exon
ATGTGTTCGCCACAGTCATCAGAGAACCAGGGTACAGTGGAACGAGGATCTTTTCCCCTTCCTCAGCTCCGTCTTGAACCCCGTGTTCCTTTTAGACAGTTCCAGATGAATGACCAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=0.902
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(19.1=75.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAAGCCGACTGTTATCC
R:
CCGTCTTGGTCATTCATCTGGA
Band lengths:
258-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development