DreEX0007121 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71265168-71268682:-
Coord C1 exon
chr5:71268539-71268682
Coord A exon
chr5:71265620-71265942
Coord C2 exon
chr5:71265168-71265292
Length
323 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGACG
3' ss Score
8.93
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
GTTTAAAGGTCTCAAGCCGACTGCAGCCCTTCTCTCACGAGGATTTTCCGACGCTGAAGGCAGCAGGAGAACAGGACAAAGTTGGCAAGGAAAGAAGCGTCTTCGATCCGTCGTATGGGCCCGGACCAAGCCTCCGCCCGCAGA
Seq A exon
ACGTGTCGAGCTGGAGGGAGGGTGGAGGGAGGAATCTGCAGCCTCCATCTCTGTCCTCTGCTCCTCCGGGCGACACCGACACCAAGAGCAGCGGCTCAGTGGAGGCTCCACTTCCTCCTCCACCCTCCACTTCCACCTCCACTTCCTCCTCCGCTTCCCCCGCCGCTTCCTCTTCCTCCACTGCCGCCGCCGCTGCTCCGTCCTCTGAAGTGAAGGAGCCATCGCTGCGTCCCGCTCCACCCCTGACCCGCAGAGCTGCTCCACCTGCTCTGCAGTACCAGCACCACACCACCACCACCTACCACGACATGCTGCCCGCCTTC
Seq C2 exon
ATGTGTCCTAAAGAGACGCGTGAGGCCCCGGGCTCCTCTGACGGCCCTGCCGCTGTCGTGGCTCCTGTACGATTCGACTCCAGACCGATCTTCAGACCGCCGTTTCCTGCGCCGGAGCCCGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.976
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(19.4=75.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTAAAGGTCTCAAGCCGACTG
R:
GCAGGAAACGGCGGTCTG
Band lengths:
254-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]