RnoEX0070285 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11207543-11210523:+
Coord C1 exon
chr3:11207543-11207686
Coord A exon
chr3:11209784-11210025
Coord C2 exon
chr3:11210402-11210523
Length
242 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTTCCACTTTACAGATG
3' ss Score
11.21
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTTAAGGGGCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGCGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
Seq A exon
ATGTGTCAAGCTGGAGGGAGGGCGGTGGGCGAAACATCATCTCTGCCGTGTCTCTGAGTGCCTCCCCAACAGAGCTGGGCAGCAGAAACTCCAGTGGGGGAGATGGAGCCTCCTCCTCGGCATGCACCAGCGATTCTAAGGACCCCTCTCTCCGCCCGGCTCAGCCCAGCCGCAAAGGGGCGTCACAGTTCATGGGACATGTTTACCAGCCGCCCACATACCATGACATGCTTCCAGCTTTT
Seq C2 exon
ATGTGTTCACCACAGTCATCCGAGAACCAGAATACGGTGGAACGAAGCTCATTCCCCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAATGACCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-'11-15,'11-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=0.924 C2=0.976
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(19.1=75.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGCCGACTGTTATCCT
R:
TTGGTCATTCATCTGGAACTGTCTG
Band lengths:
252-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]