MmuEX6100501 @ mm10
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32191509-32194501:+
Coord C1 exon
chr2:32191509-32191652
Coord A exon
chr2:32193763-32194004
Coord C2 exon
chr2:32194380-32194501
Length
242 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTCCACTTCACAGATG
3' ss Score
10.29
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTTAAGGGGCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGAGGGCAGGACAAGGCTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCTCAGA
Seq A exon
ATGTGACAAGCTGGAGGGAGGGCGGTGGGCGGAACATCATTTCTGCCGCCTCTCTGAGCGCCTCCCCAACAGAGCTGGGCAGCAGGAACGCCAGTGGGGCAGACGGAGCCCCTTCCTTGGCATGCACCAGCGATTCTAAGGAGCCCTCTCTCCGCCCAGCTCAGCCCAGCCGCAGAGGGGCCTCCCAATTCATGGGGCACGGTTACCAGCCACCCACGTACCATGACATGCTCCCAGCGTTT
Seq C2 exon
ATGTGTTCACCACAGTCATCAGAGAACCAGACTACGGTGGAACGAAGCTCTTTTCCCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAACGACCAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'43-21,'43-11,52-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.975 C2=0.976
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(19.1=75.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGCCGACTGTTATCCT
R:
CCATCTTGGTCGTTCATCTGGA
Band lengths:
257-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types