GgaEX1046425 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6817776-6819227:+
Coord C1 exon
chr17:6817776-6817919
Coord A exon
chr17:6818445-6818686
Coord C2 exon
chr17:6819106-6819227
Length
242 bp
Sequences
Splice sites
3' ss Seq
AATTGTTACCTCCTTTCCAGATG
3' ss Score
8.98
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTCAAGGGCCTCAAGCCGACTGTTATCCTTCTCTCCCGAGGAATTTCCGACGCTGAAAGCAGCTGGCGAGCAGGACAAGGTTGGCAAAGAAAAGGGCGCCTTAGATCTGTCGTATGGGCCAGGACCAAGCCTCCGCCCCCAGA
Seq A exon
ATGTCACAAGTTGGAGGGAGGGCGGTGGGAGGAACATAACCTCTGCTACATCTCTGACCGCCTCCCCTGCTGAGCTGGGCAGCAAGACCTCTAGCACTGGAGACGGAGCCCCCTCCTCAGTGAGTGCCAGCGATCCTAAGGAGCCGTCTCTCCGCCCAGCTCAGCCTGTCCGCAAAGGGGCTTCGCAGTTCATGGGAAATGTCTACCAGCCACCTACATACCATGACATGCTACCTGCTTTT
Seq C2 exon
ATGTGTCCACAACAGCCATCTGAGACCCCTGCGCCATTGGACCGAGGGTCTTTCCCCGTTCCTCAGCTTCGGCTTGAGCCCCGTGTCCCTTTCAGACAATACCAGATGAATGACCAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.975 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(19.1=75.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAAGCCGACTGTTATCC
R:
CCATCCTGGTCATTCATCTGGT
Band lengths:
258-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]