BtaEX0029445 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027809 | RABGAP1L
Description
Bos taurus RAB GTPase activating protein 1-like (RABGAP1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001103263]
Coordinates
chr16:57018106-57034762:+
Coord C1 exon
chr16:57018106-57018298
Coord A exon
chr16:57029825-57030035
Coord C2 exon
chr16:57034588-57034762
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTCTTCCCTCAGAAA
3' ss Score
11.33
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATAGTTTCTAATGGTGATGAACAACTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCGGAGAAGGGGCAAAGCAGCCTTCCTGTTGATTGTCCAAGTTCCAGTGAGATTTCAGACCATTCATTTGGAAATATTTCAGCCAGGCAAACAAATAAGCCATCTCTTCAGTTAATTTTGGATCCATCAAATACAG
Seq A exon
AAATTTCTACACCCAGACCATCTTCTCTAAGTGAAATACCTGAAGAGGATAGTGTTTTATTTAACAAACTGACCTATTTAGGATGTATGAAGGTTTCATCCCCACGTAATGAAGTGGAAGCTTTACGGGCAATGGCAACTATGAAATCTGCCAGTCAGCACCCGTTTCCTGTTACTCTGTATGTGCCAAATGTTCCAGAAGGTTCTGTGAG
Seq C2 exon
AATCATAGACCAATCCAACAATATGGAGATAGCATCTTTTCCAATTTATAAGGTATTGTTCTGTGCACGTGGCCATGATGGGACAACAGAGAGCAATTGCTTTGCGTTTACAGAGAGTTCCCATGGTTCTGAAGAATTCCAGATACATGTCTTCTCCTGTGAAATTAAAGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027809-'6-6,'6-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.296 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(44.4=67.6)
C2:
PF0064018=PID=FE(53.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGAAAAAGCCATGGA
R:
TGGGAACTCTCTGTAAACGCA
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development