DreEX6098576 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17288360-17293210:+
Coord C1 exon
chr22:17288360-17288495
Coord A exon
chr22:17290132-17290339
Coord C2 exon
chr22:17293036-17293210
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCATTGTCTGTCGCAACAGAAT
3' ss Score
7.01
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ATGTCGTGGAATGGGAGTGAGCAGCTGGAGCGGGCGATGGAGGAGGTGTTGGATGATGTTGCTGATGGAGCAGGAGCTGAACAGGAGAAGGGATGCACTCAGATCAGACCGCCCAGTCTGGACACAGCTCCACACG
Seq A exon
AATCCTCAGCAGCACTGCTCGAGAGTCCGACTGTCCCAGAGGAAGAGAGTGTTCAATTCAGTAAACTGTCCTATCTGGGCTGCACCTGGGTGAAGGCTCCACGCAGTGAGACGGAGGCCCAGAAAGCCATGGCTACCTTGAGGGCGGAGAGTGCCATTCCCATTCCCGTCATCCTCCATGTGCCCAACGGCTCCGACGGTTGTGTCCG
Seq C2 exon
GATCGTGGACCAGGCCAGCGGAACAGAAATAGCGTCTTTTCCCATCTATAAGGTGTTGTTTTGCGCACGAGGATGCGAGGGATCTGTTGAGAGTGACTGCTTTTCTTTCACTGAGAGCTACCGCAGCTCTGAGGACTTTCAGATTCACGTCTTTTCCTGCCATATCAAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.243 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=68.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAATGGGAGTGAGCAGC
R:
CGCCTCTTTGATATGGCAGGA
Band lengths:
306-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]