BtaEX6046034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94142249-94147404:+
Coord C1 exon
chr11:94142249-94142483
Coord A exon
chr11:94143627-94143831
Coord C2 exon
chr11:94147230-94147404
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTCCTTATTGTTTCTTTCAGATT
3' ss Score
11.25
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTATAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTGCTGATGGATCCTCCAATGGACGACCAGCCAGGGGACAAGGAGCTTGTGGAAAGGTCACAGCTGGATGGCGAAGGAGATGGGCCTCTTTCTAATCAACTCTCAGCTTCATCCACCATTAACCCTGTGTCATTAGTAGGGCTCCAGAAACCAGAGATGAGCCTGCCAGTGAAACCTGGACAAGGAG
Seq A exon
ATTCTGAAGGGTCAAGTCCTTTCACACCAGTGGCAGATGAGGACAGTGTAGTTTTCAGCAAACTAACTTATTTAGGCTGTGCCTCAGTAAATGCTCCCAGGAGTGAAGTGGAAGCCTTGAGGATGATGTCCATCTTAAGGGGCCAGTGTCAGATCTCACTAGATGTAACCCTGTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
Seq C2 exon
ACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTTTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCACTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACATGTCTTTCGGTGTGAAATACAAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'11-9,'11-8,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.899 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(43.6=69.6)
C2:
PF0064018=PID=FE(52.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCAAAAAGAGCTAGC
R:
TCAGGAGTTCCATCATGCCCT
Band lengths:
302-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]