MmuEX6100920 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37472295-37475466:+
Coord C1 exon
chr2:37472295-37472514
Coord A exon
chr2:37473579-37473783
Coord C2 exon
chr2:37475292-37475466
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGGTTTCTTTCAGATT
3' ss Score
11.96
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATTGTAGGAAATGGAAGTGAGCAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGATCCTCCCATGGACGACCAGCCAGGGGAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAACTCTCAGCTTCATCCACCATTAATCCTGTGCCTCTGGTAGGGCTTCCGAAACCAGAGATGAGCCTGCCAGTGAAACCTGGACAAGGAG
Seq A exon
ATTCTGAAGTATCAAGTCCTTTTACACCAGTGGCTGATGAGGATAGTGTGGTTTTCAATAAACTAACTTACTTAGGCTGTGCTTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGAGGATGATGTCCATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
Seq C2 exon
ACTTTTAGATCCTCAAACAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTCAGAGGACATGATGGGACTCCTGAGAGTGACTGTTTTGCATTCACTGAAAGTCACTACAACGCAGAGCTCTTCAGGATACATGTCTTTCGCTGTGAAATACAAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'6-11,'6-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.164 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=69.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
ENSMUST00000061179fB15548
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATCCTCCCATGGACGA
R:
GAGCTCTGCGTTGTAGTGACT
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types