DreEX6087115 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8810186-8815033:-
Coord C1 exon
chr10:8814811-8815033
Coord A exon
chr10:8812185-8812392
Coord C2 exon
chr10:8810186-8810360
Length
208 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATCACTGCCTCTAGATG
3' ss Score
6.91
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGGAACGGTAGTGAGCAGCAGTTACAGCAGGAGCTGGAAGATGTGCTGATGGACCCTTCAGTCACTGAACTGGTGGTTGGACCGGATCATTTGGGACAGGGTGACCATGGCTATCCCACTACAGCTGTGCCATCACGCTCCGGCTCTGTGCCTCCTAAACTCGAGATAGTGCTGCCCATTCAGGGAGCTCAGGAGAGTGAACTCAATGAGAGATCTTACAGGG
Seq A exon
ATGAGCCCTCTGACTTGAGTCCTGGTACCCCTGTCCCAGATGAGGACAGCGTGGTGTTCAGTAAACTGACGTATTTAGGTTGTGCGTCAGTGAACGCCCCACGCAGTGAGGTGGAGGCCCTGCGCATGGTCAGCATCCTCCGCAGCCAGTGCCAGATGCCCCTGGATGTCACGCTCTCTGTACCCGGAGTCTCAGAGGGCACCGTCAG
Seq C2 exon
ACTGCTGGACCCTCAGAGCAGCACTGAGATTGCCAATTACCCCATTTACAAGATCCTCTTCTGTGTTCGTGGTCATGACGGGACGCCTGAGAGCGACTGCTTCGCATTCACTGAAAGCCATTACAACACCGAGATCTTCCGTATCCACGTCTTCCGCTGTGAGATCCAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.200 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=68.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCATTTGGGACAGGGTG
R:
GATCTCACAGCGGAAGACGTG
Band lengths:
307-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]