GgaEX6015582 @ galGal3
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9540856-9542466:+
Coord C1 exon
chr17:9540856-9541090
Coord A exon
chr17:9541605-9541809
Coord C2 exon
chr17:9542292-9542466
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCAACTTTGTCTTACCCTAGATT
3' ss Score
7.98
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
ATTGTTGGGAATGGAAGCGAACAGCAGCTGCAGAGGGAACTTGAAGACGTGCTGATGGATCCACCCATGGAAGATCAGTCAAGTGACCGAGACCATGGCGATGAAGTTAGGACTGATGGTGATGGGGAAGAACCTGTTGTCCTTGAAGCTTCAGCATCTTCTACCATTAACCCGGTGTCGGTGGCAGGACTCCAAAAACCAGAAATGAGTTTGCCAGTGAAACCATCCCAGGGAG
Seq A exon
ATTGCGGGGATTTGAGCCCTTTTACACCTGTGACTGATGAGGACAGTGTGGTATTTAGCAAGCTCACCTACTTAGGCTGTGCCTCTGTGAATGCTCCCCGGAGTGAAGTGGAAGCCCTCAGAATGATGTGCATCCTACGAAGCCAGTGCCAGATTTCTCTAGATGTGACTCTGTCAGTGCCTAATGTCTCTGAAGGAACAGTGAG
Seq C2 exon
ACTTTTAGATCCTCAGACGAACACAGAAATAGCAAATTATCCAATCTATAAAATCCTTTTCTGTGTACGAGGGCATGATGGGACCCCTGAATGTGATTGCTTTGCTTTCACTGAAAGCCACTACAATGCAGAACTCTTCAGGATTCACGTCTTCCGATGCGAGATTCAAGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.116 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=69.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGATGGGGAAGAACCTGT
R:
GCCTCTTGAATCTCGCATCGG
Band lengths:
293-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]