RnoEX0073389 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21724192-21727638:+
Coord C1 exon
chr3:21724192-21724414
Coord A exon
chr3:21725201-21725405
Coord C2 exon
chr3:21727464-21727638
Length
205 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTGTTTCTTTCAGATT
3' ss Score
12.41
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTGTAGGGAATGGGAGTGAACAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGATCCTCCCATGGACGACCAGCCAGGGATGGAAAGGTCACACCTGGATGGGGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCAGCTTCATCCACCATTAATCCTGTGCCCCTGGTAGGGCTTCAGAAACCAGAGATGAGCCTGCCAGTGAAATCTGGACAAGGAG
Seq A exon
ATTCTGAAGTGTCAAGTCCTTTCACACCAGTGGCTGATGAGGATAGTGTAGTTTTCAATAAACTAACTTACTTAGGCTGTGCCTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGAGGATGATGTCTATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
Seq C2 exon
ACTTTTAGATCCTCAAATAAACACTGAAATAGCAAACTACCCTATCTACAAAATCCTCTTCTGTGTTAGAGGGCATGATGGGACTCCTGAAAGTGACTGTTTTGCATTCACTGAAAGTCACTACAACGCAGAGCTCTTCAGGATACATGTCTTTCGCTGTGAAATACAAGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'13-7,'13-5,15-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=69.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
ENSRNOT00000013378fB12026
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGGGAGTGAACAGCAG
R:
GGAGTCCCATCATGCCCTCTA
Band lengths:
304-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]