RnoEX6044984 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78502130-78520217:-
Coord C1 exon
chr13:78520025-78520217
Coord A exon
chr13:78504187-78504397
Coord C2 exon
chr13:78502130-78502304
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTTTTTTTCCAGAAA
3' ss Score
10.82
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
ATAGCTTCCAATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGGCAAAGCAGTCTACCTGTTGATGGCCAAGGATCCAGTGAGATTTCAGACCATTCCTTTGGAGATGTTCCAGCCAGCCAATCAAATAAACCACCTCTCCAGTTAATTTTGGATCCATCTAATACAG
Seq A exon
AAATTTCCACACCCAGACCATCTTCTCCAAGTGGATTTCCTGAAGAAGACAGTGTTCTCTTTAACAAGTTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGTAGTGAAGGGGAGGCTTTACGTGCAATGGCCACCATGAGAGCTTCCAGTCAATACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCAGAAGGATCCGTGAG
Seq C2 exon
AATCATCGACCAGTCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATAAAGTCTTGTTCTGTGCGCGTGGGCATGATGGGACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCATGGTTCAGAAGAGTTTCAGATACACGTTTTCTCCTGTGAAATTAAAGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'6-12,'6-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.296 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(38.4=67.6)
C2:
PF0064018=PID=FE(46.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTTCCAATGGTGATGAGCA
R:
GCAATTGCTCTCTGTTGTCCC
Band lengths:
292-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]