GgaEX1047834 @ galGal4
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
rab GTPase-activating protein 1-like [Source:RefSeq peptide;Acc:NP_001012941]
Coordinates
chr8:7271194-7273494:-
Coord C1 exon
chr8:7273302-7273494
Coord A exon
chr8:7272001-7272211
Coord C2 exon
chr8:7271194-7271368
Length
211 bp
Sequences
Splice sites
3' ss Seq
GATGGTTTCTTCATTTTCAGAAG
3' ss Score
8.18
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTGTTCTCAAATGGAGATGATCAGCTGGAGAAGGCAATGGAGGAGATACTGAGGGATTCTGAAAAAGACCAGAACAACTCCACTGCTCTCCCCGAAGGTTCCAGTGATGCATGCAGCCAGGCATCTGGACTTGGCTCAGCAGGTCAAACAAATCAGCCGTCCTTGCAACTTGTTTTAGACCCTTCTACTACAG
Seq A exon
AAGTGTCTGCACGAAGGTCATCTTCTCCCAGTGAACCCTTGGAAGAGGACAGTGTATTGTTTAACAAACTGACTTACCTGGGTAGCATGAAAGTGTCTGCCCCTCGGAATGAGCCAGAAGCTCTACGTGCCATGGCAAACATGAAATCCTCCAGTCAGGCCCCTCTATCTGTAACACTCTATGTTCCAAATGTTCCAGAAGGCTCTGTAAG
Seq C2 exon
AATAATAGATCAGTCAAGCAATGTGGAGATAGCCTCTTTCCCAATCTATAAAGTGTTGTTTTGTGTGCGTGGACAGAATGGGACTTCAGAAAGTGACTGTTTTGCGTTTACTGAAAGCAGTTGTGGAACAGAAGAGTTCCAGATTCATGTTTTCTCCTGTGAAATTAAAGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.408 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064018=PID=PU(37.5=67.6)
C2:
PF0064018=PID=FE(45.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGCAATGGAGGAGA
R:
ACTCTTCTGTTCCACAACTGCT
Band lengths:
305-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]