BtaEX0029616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61641255-61688470:+
Coord C1 exon
chr16:61641255-61641347
Coord A exon
chr16:61646353-61646479
Coord C2 exon
chr16:61688333-61688470
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGTTTGTCTTATAGTTA
3' ss Score
10.3
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAGTTGTATGAGCTGAATAACCTTCATGCACTTATGGCGGTGGTTTCTGGCTTACAGAGTGCCCCAATTTTCAGGTTGACTAAAACATGGGCG
Seq A exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAATTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCCTGCATTCCCTATTTAG
Seq C2 exon
GTATCTATCTATCTGATTTAACATATATTGATTCAGCATATCCATCAACTGGCAGCATTCTAGAAAATGAGCAAAGATCAAACTTGATGAATAACATCCTTAGAATAATTTCTGATTTACAGCAGTCCTGTGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718-'14-19,'14-14,15-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.5=100)
A:
PF0061714=RasGEF=FE(21.8=100)
C2:
PF0061714=RasGEF=PD(18.1=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGTATGAGCTGAATAACCTTCA
R:
TCACAGGACTGCTGTAAATCAGA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development