DreEX6044290 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16075401-16135167:-
Coord C1 exon
chr20:16135075-16135167
Coord A exon
chr20:16121047-16121173
Coord C2 exon
chr20:16075401-16075538
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTCGCTCTGTTTCCTACAGCTT
3' ss Score
10.7
5' ss Seq
TGGGTATTT
5' ss Score
3.4
Exon sequences
Seq C1 exon
AAACTGTGTGACATGAACAGTCTCCACGCAGTGATGGCAGTGGTATCTGCTCTACAGAGCGCCCCAATCTTCAGACTCACAAAGACATGGGCT
Seq A exon
CTTTTAAGTCGGAAGGACAAGGCCACGTTTGAGCGGTTGGAGTATCTGATGTCTAAAGAGGACAACTACAAACGTTTGAGGGATTACATCAGCAGCCAGAGCATGACATCCTGCATCCCGTATCTGG
Seq C2 exon
GAATCTATTTGTCTGATCTGACGTACATTGATTCGGCGTATCCCTCCACTGGAAGCATCCTTGAAAACGAACAGCGCTCCAACCTCATGAACAACATTCTGAGAATCATCTCAGACCTGCAGAGATCCTGTGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(3.5=6.5),PF0061714=RasGEF=FE(26.8=100)
A:
PF0061714=RasGEF=FE(21.6=100)
C2:
PF0061714=RasGEF=PD(18.6=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACATGAACAGTCTCCAC
R:
CAGGATCTCTGCAGGTCTGAG
Band lengths:
219-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]