GgaEX1048069 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6636919-6662986:-
Coord C1 exon
chr8:6662894-6662986
Coord A exon
chr8:6659716-6659842
Coord C2 exon
chr8:6636919-6637056
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCCTTTGTTTTGTAGTTA
3' ss Score
7.39
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AAACTGTATGAGCTGAACAATCTGCACGCTCTTATGGCAGTTGTATCAGGCCTACAGAGTGCTCCTATCTTCAGACTGACTAAAACGTGGGCG
Seq A exon
TTACTGAGTCGGAAGGATAAAGCCACTTTTGAGAAGTTGGAGTATGTTATGAGTAAAGAAGATAATTACAAAAGGCTTAGAGATTATATCAGCAGCTTGAAGATGACTCCATGTATTCCCTATTTAG
Seq C2 exon
GTATTTATCTGTCAGACTTGACGTACATTGATTCTGCATACCCATCGACGGGGAGCATTCTGGAAAGTGAGCAAAGAACAAACTTAATGAACAACATCCTACGAATTATCTCAGATTTACAACAGTCCTGTGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'16-21,'16-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.5=100)
A:
PF0061714=RasGEF=FE(21.6=100)
C2:
PF0061714=RasGEF=PD(18.6=76.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGTATGAGCTGAACAATCTG
R:
TCACAGGACTGTTGTAAATCTGAGA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]