MmuEX6028491 @ mm9
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158763026-158814756:-
Coord C1 exon
chr1:158814664-158814756
Coord A exon
chr1:158799572-158799698
Coord C2 exon
chr1:158763026-158763163
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGTTTGCTTTTTAGTTA
3' ss Score
10.54
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAACTATATGAACTTAACAACCTTCACGCACTTATGGCTGTGGTTTCTGGCTTACAGAGTGCGCCGATTTTCCGGTTGACTAAGACGTGGGCG
Seq A exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTTGCATTCCCTATTTAG
Seq C2 exon
GCATCTATTTGTCTGACTTGACCTACATTGACTCCGCGTACCCATCCACCGGCAGCATTCTAGAAAATGAGCAAAGATCAAATCTGATGAACAACATTCTTCGAATAATTTCTGATTTGCAGCAGTCCTGTGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'16-16,'16-13,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.4=100)
A:
PF0061714=RasGEF=FE(21.5=100)
C2:
PF0061714=RasGEF=PD(19.0=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAACTTAACAACCTTCACGCAC
R:
CATATTCACAGGACTGCTGCA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: