BtaEX0029620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61700773-61706046:+
Coord C1 exon
chr16:61700773-61700827
Coord A exon
chr16:61704317-61704394
Coord C2 exon
chr16:61705941-61706046
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTAGCAGTGATGGCTCTGAACTAAGTGAAGAGACCTCATGGCCTGCTTTTGAAAG
Seq A exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGCCACATGAAGGCCAGCAG
Seq C2 exon
TTCTGCAGAATCAGAGGATTTGGCAGTACATTTATATCCAGGGGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAGAAGCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718_MULTIEX2-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAGTGATGGCTCTGAACT
R:
GCTTCTTGCCTTCTTTTAACAAAGT
Band lengths:
156-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development