GgaEX0005676 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6618202-6623421:-
Coord C1 exon
chr8:6623367-6623421
Coord A exon
chr8:6619867-6619944
Coord C2 exon
chr8:6618202-6618307
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTAGCAGTGATGGTTCTGAACTGAGTGAAGAGACTTCCTGGCCAGCATTTGAAAG
Seq A exon
GAACAGGTTGTACCATTCTCTCGGTCCGGGGACAAGAGTGTCACGAAATGGCTATCGAGGCCACATGAAGGCCAGCAG
Seq C2 exon
CTCTCTAGAATCTGAAGATTTGGCCGTTCATTTGTATCCAGGAGCAGTTACTATTCAAGGCGTTCTCAGAAGGAAGACTTTGTTGAAAGAAGGCAAAAAACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.421 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAGTGATGGTTCTGAACTGA
R:
TTGCCTTCTTTCAACAAAGTCTTCC
Band lengths:
151-229
Functional annotations
There are 0 annotated functions for this event