HsaEX0052103 @ hg19
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:30279]
Coordinates
chr1:178858777-178863159:+
Coord C1 exon
chr1:178858777-178858831
Coord A exon
chr1:178861365-178861442
Coord C2 exon
chr1:178863054-178863159
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTAGCAGCGATGGTTCTGAACTAAGTGAAGAGACCTCATGGCCTGCTTTTGAAAG
Seq A exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGTCACATGAAGGCCAGCAG
Seq C2 exon
TTCTGCAGAATCAGAAGATTTGGCAGTACATTTATATCCAGGAGCTGTTACTATTCAAGGTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAAAAGCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.222 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154131=PH_11=PU(24.3=47.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAGCGATGGTTCTGAACT
R:
GCTTTTTGCCTTCTTTTAACAAAGT
Band lengths:
156-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)