MmuEX0038676 @ mm9
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:158749944-158754176:-
Coord C1 exon
chr1:158754122-158754176
Coord A exon
chr1:158751518-158751595
Coord C2 exon
chr1:158749944-158750049
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTATAATGGAATCCAACAGGAA
3' ss Score
4.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GGAGCAGTGATGGTTCTGAACTAAGCGAAGAGACCTCATGGCCGGCTTTTGAAAG
Seq A exon
GAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGCCGCGAAATGGCTATCGAAGCCACACGAAGGCCAGCAG
Seq C2 exon
CTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAGGTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.495 A=0.519 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTGATGGTTCTGAACT
R:
TGTGGGTTTCTTGCCTTCTTT
Band lengths:
161-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types