DreEX0060679 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16053439-16070441:-
Coord C1 exon
chr20:16070387-16070441
Coord A exon
chr20:16065529-16065606
Coord C2 exon
chr20:16053439-16053544
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGACCACTGACACTCTACAGGAC
3' ss Score
6.95
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGAGCAGCGAAGGATCGGAGCTCAGCGAGGAAATGTCATGGCCTGCTTTTGAAAG
Seq A exon
GACTCGATTCTACCACTCTCTGGGTCCCGTCACCAGAGTGGGCCGCATGTCCTGCAGAGGATCGCTCAGGCCCAGCAG
Seq C2 exon
CTCTGCAGAGTCGGAGGAGCTGGCGGTTCATCTGTACCCAGGAGCCGTCACCGTTCAGGGCGTCTTACGCAGAAAAACAGTCCTAAAGGAGGGCAAGAAACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATCGGAGCTCAGCGAG
R:
GTGGGTTTCTTGCCCTCCTTT
Band lengths:
152-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]