BtaEX0029694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006828 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chr5:32704352-32705559:+
Coord C1 exon
chr5:32704352-32704520
Coord A exon
chr5:32705089-32705173
Coord C2 exon
chr5:32705499-32705559
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCCATGTGCCCGCAGCCC
3' ss Score
10.33
5' ss Seq
TCGGTCAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
TGAAACACGACTGGGCCTTCCAGGACCGAGACACCCAGTTCTACCGTTTCCCGGGGCCGGAGCCAGAGCCTGTGGGTGTCCATGAGCTAGAGGAAGAGCTGGTGGAGGCTCTGGCCCTGTTGTCCCAGCGGGGGCCCGATGCCCTGCTCACGGTGGCACTTCGAAAGCC
Seq A exon
CCCTGGTCAGCGCACAGATGAGGAGCTGGACCTCATCTTTGAGGAGCTGCTGCACATCAAGGCCGTGGCCCACCTCTCCAACTCG
Seq C2 exon
GTGAAGCGGGAACTGGCTGCAGTCCTGCTCTTTGAACCGCACAGCAAGGCAGGAACTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006828-'7-10,'7-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(22.5=28.1)
A:
NO
C2:
PF0002724=cNMP_binding=PU(8.2=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGTTCTACCGTTTCCC
R:
GCGGTTCAAAGAGCAGGACTG
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development