GgaEX6047018 @ galGal3
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
NA
Coordinates
chrE22C19W28_E50C23:447503-448209:+
Coord C1 exon
chrE22C19W28_E50C23:447503-447677
Coord A exon
chrE22C19W28_E50C23:447889-447973
Coord C2 exon
chrE22C19W28_E50C23:448149-448209
Length
85 bp
Sequences
Splice sites
3' ss Seq
CACCCCTGCCCCCCTCCCAGGCC
3' ss Score
8.93
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TGAAACAGGAGTGGCATTTCCAGGACAAGGACACCCAGTTCTATCGCTTTGCTGAGTTGGAGCTGAGCCCTGAGCCCCGCGTGGGGCTGCGGGATGCGGAGGAGCTGCTGGAGGCGGTGACCTTCCTGGCACAGCTGGGGCCCGATGCGCTGCTCACCATGGCCCTGCGCAAACC
Seq A exon
GCCTGCTCAGCGCACAGAGGACGAGCTGGAGCTCATCTTTGAGGAGCTGCTCCACATTAAAGCCGTGGCTCACCTCTCCAACTCG
Seq C2 exon
GTGAAACGGGAGCTGGCATCTGTGCTGATGTTCGAGTCGCACCAGCGAGCCGGCACCGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(22.5=27.1)
A:
NO
C2:
PF0002724=cNMP_binding=PU(9.3=38.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGAGTTGGAGCTGAGC
R:
CTGGTGCGACTCGAACATCAG
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]