DreEX6081737 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33488458-33491025:+
Coord C1 exon
chr23:33488458-33488638
Coord A exon
chr23:33490784-33490868
Coord C2 exon
chr23:33490965-33491025
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCGCTCTGTCCATGTCATAGCCC
3' ss Score
5.09
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TAAAACAGGAGTTAAACTTCCATGACAAAGACACACAGTTTTACCGCTTTATGGAAGCAGAGTTTGACCTCAATCACACAACTAACGAAAAAGACTCCAAAGACGACGAACTACAAGAGAGTTTATCGCTACTAATCCAGATGGGCCCAGATGCTCTTTTGACGATGATACTGCGTAAATG
Seq A exon
CCCAAGCCAGAGAACCCCAGAAGATCTGGAAGTTATTTATGAAGAACTTCTGCACGTCAAAGCTGTGGCCCACTTGTCTACATCT
Seq C2 exon
GTTCGTAAAGAGCTGGCATCAGTGCTGGTATTTGAAAGCCATGCCAAGGCGGGAACAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291-'7-7,'7-6,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(22.9=26.2)
A:
NO
C2:
PF0002724=cNMP_binding=PU(10.3=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCAGAGTTTGACCTCA
R:
GCCTTGGCATGGCTTTCAAAT
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]