RnoEX6017416 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58846809-58864635:+
Coord C1 exon
chr3:58846809-58846822
Coord A exon
chr3:58864012-58864096
Coord C2 exon
chr3:58864575-58864635
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTACCGTCTTTCTTTACAGACC
3' ss Score
12.42
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TCCCTGCGAAAACC
Seq A exon
ACCTGGCCAGAGGACTGCAGATGACCTAGAGATTATCTACGACGAACTCCTTCATATTAAAGCCTTATCCCATCTTTCTACCACA
Seq C2 exon
GTGAAACGGGAGTTAGCAGGTGTTCTCATTTTTGAGTCTCACGCCAAAGGAGGAACTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'37-24,'37-23,39-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002724=cNMP_binding=PU(10.3=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]