DreEX6034771 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2969695-2974239:-
Coord C1 exon
chr9:2974056-2974239
Coord A exon
chr9:2971958-2972042
Coord C2 exon
chr9:2969695-2969755
Length
85 bp
Sequences
Splice sites
3' ss Seq
TATTGTCCTGTTCACCGCAGACC
3' ss Score
9.95
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGACCAGGAGCCGACTTTCCAAGATAAATATCTGTTTTATCGCTTTCTGGATGACGAAAGTGAGGATTCAGGAATGCCGAGTGAGGAAGACAAGAAGGAGAGTGACGAAGAGCTGCAGGACACGCTTCTGCTGCTGTCTCAGATCGGCCCTGATGCTCATCTGCGGATGATCCTGCGCAAACA
Seq A exon
ACCCGGCCAGAGGACGGTCGATGACCTGGAGATCATTTATGAGGAGCTGCTGCACATTAAAGCCTTGTCCCATCTCTCCACCACT
Seq C2 exon
GTGAAGAGGGAACTCGCTGGTGTTTTAATATTTGAGTCGCATGCGAAAGCAGGCACAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061016=DEP=PD(21.1=24.2)
A:
NO
C2:
PF0002724=cNMP_binding=PU(10.3=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAGTGAGGAAGACAAGA
R:
ACTGTGCCTGCTTTCGCATG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]